General study characteristics Sample Clauses

General study characteristics. Of the 24 studies, 21 (87.5%) made use of existing data, while three (12.5%) applied the methods to simulated datasets. Descriptive statistics are shown in Table 5.2. The median total sample size was 920 patients, the median number of predictors was 7 (low-dimensional data), and the median percentage of censoring was 70.8% (10 of 24 studies considered multiple outcomes). Medical applications were mainly in the field of oncology (73.5%, 25 datasets). The majority of these studies conducted research on breast cancer (10 datasets), and cervical cancer, gastric cancer or prostate cancer (2 datasets each). Other fields of application comprised cardiovascular disease, coronary artery disease, liver transplantation and post-partum amenorrhea (2, 1, 1, and 1 datasets, respectively). Clinical endpoints of interest included overall survival (analysed 16 times, 47.1%) and disease-free (or progression free, recurrence-free, relapse-free) survival (analysed 12 times, 35.3%). Remaining endpoints were breast cancer specific mortality (5.9%), death or hospitalization due to cardiovascular events (5.9%), menstruation-free survival (2.9%) and time to clinical artery events (2.9%). Min 1st Qu. Median 3rd Qu. Max Excel lines Total sample size 96 242 920 1616 361239 33 # of predictors 1 5 7 25.75 97 32 % of events 6.60 21.32 29.25 47.58 97.90 20 Table 5.2: General characteristics for the 24 studies. If multiple outcomes were predicted, multiple lines were used in the extraction sheet. Maximum number of lines was 34 (10 studies used multiple outcomes). For simulation studies, the number of predictors and percentage of events were not considered, unless they were fixed (e.g., not varied across simulations). The strategy used to address the missing data (if any) was unclear for 9/21 (42.9%) studies (disregarding the 3 simulation studies that did not contain any missing data). Single or multiple stochastic imputation was used for 6 studies (28.6%) and ad-hoc approaches (separate attribute or mean / median imputation) were used in 5 studies (23.8%). One dataset had no missing data. Ad-hoc approaches to missing data can be problematic, as they can alter the distribution of a variable (if there is a substantial number of missing values). Multiple stochastic imputation, which replaces each missing value with multiple plausible values, is the preferable option [52], as the variability in multiple predictions reflects the uncertainty of the imputation process. It is understandable that ...
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  • Study Population The study was based at the San Francisco KPNC Anal Cancer Screening Clinic. We enrolled men who were identified as positive for HIV through the Kaiser HIV registry, who were aged ≥ 18 years, who were not diag- nosed with anal cancer before enrollment, and who pro- vided informed consent. In total, 363 men were enrolled between August 2009 and June 2010. The study was reviewed and approved by the institutional review boards at KPNC and at the National Cancer Institute. All partici- pants were asked to complete a self-administered ques- tionnaire to collect risk factor information. Additional information regarding HIV status and medication, sexu- ally transmitted diseases, and histopathology results were abstracted from the KPNC clinical database. For 87 of the 271 subjects without biopsy-proven AIN2 or AIN3 at the time of enrollment, follow-up infor- mation concerning outcomes from additional clinic visits up to December 2011 was available and included in the analysis to correct for the possible imperfect sensitivity of high-resolution anoscopy (HRA).13,15 Clinical Examination, Evaluation, and Results During the clinical examination, 2 specimens were col- lected by inserting a wet flocked nylon swab16 into the anal canal up to the distal rectal vault and withdrawing with rotation and lateral pressure. Both specimens were trans- ferred to PreservCyt medium (Hologic, Bedford, Mass). A third specimen was collected for routine testing for Chla- mydia trachomatis and Neisseria gonorrhea. After specimen collection, participants underwent a digital anorectal ex- amination followed by HRA. All lesions that appeared sus- picious on HRA were biopsied and sent for routine histopathological review by KPNC pathologists, and were subsequently graded as condyloma or AIN1 through AIN3. No cancers were observed in this study population. From the first specimen, a ThinPrep slide (Hologic) was prepared for routine Xxxxxxxxxxxx staining and xxxxx- xxxxx. Two pathologists (T.D. and D.T.) reviewed the slides independently. Cytology results were reported anal- ogous to the Bethesda classification17 for cervical cytology except when otherwise noted. The following categories were used: negative for intraepithelial lesion or malig- xxxxx (NILM); ASC-US; atypical squamous cells cannot rule out high-grade squamous intraepithelial lesion (HSIL) (ASC-H); low-grade squamous intraepithelial lesion (LSIL); HSIL, favor AIN2 (HSIL-AIN2); and HSIL-AIN3. ASC-H, HSIL-AIN2, and HSIL-AIN3 were combined into a single high-grade cytology category for the current analysis. Biomarker Testing Using the residual specimen from the first collection, mtm Laboratories AG (Heidelberg, Germany) performed the p16INK4a/Ki-67 dual immunostaining (‘‘p16/Ki-67 staining’’) using their CINtec Plus cytology kit according to their specifications. A ThinPrep 2000 processor (Holo- gic) was used to prepare a slide, which then was stained according to the manufacturer’s instructions. The CINtec Plus cytology kit was then applied to the unstained cytol- ogy slide for p16/Ki-67 staining. On the second collected specimen, Roche Molecular Systems (Pleasanton, Calif) tested for HR-HPV, includ- ing separate detection of HPV-16, and HPV-18 DNA, using their cobas 4800 HPV test. To prepare DNA for the cobas test, automated sample extraction was per- formed as follows: 500 lL of the PreservCyt specimen was pipetted into a secondary tube (Falcon 5-mL polypropyl- ene round-bottom tube, which measured 12-mm-by-75- mm and was nonpyrogenic and sterile). The tube was capped, mixed by vortexing, uncapped, placed on the x-480 specimen rack, and loaded onto the x-480 sample extraction module of the cobas 4800 system. The x-480 extraction module then inputs 400 lL of this material into the specimen preparation process. The extracted DNA was then tested as previously described.16 NorChip AS (Klokkarstua, Norway) also tested the second specimen for HPV-16, -18, -31, -33, and -45 HPV E6/E7 mRNA using their PreTect HPV-Proofer assay according to their specifications. All testing was per- formed masked to the results of the other assays, clinical outcomes, and patient characteristics.

  • Characteristics The Initial Contracts have the following characteristics: (i) all the Contracts are secured by Motorcycles; (ii) no Initial Contract has a remaining maturity of more than 84 months; and (iii) the final scheduled payment on the Initial Contract with the latest maturity is due not later than October 2013. Approximately 81.41% of the Principal Balance of the Initial Contracts as of the Initial Cutoff Date is attributable to loans for purchases of new Motorcycles and approximately 18.59% is attributable to loans for purchases of used Motorcycles. No Initial Contract was originated after the Initial Cutoff Date. No Initial Contract has a Contract Rate less than 0.900%. The last scheduled payment date of the Contracts (including any Subsequent Contracts) is due no later than January 2014. Approximately 98.85% of the Principal Balance of the Initial Contracts as of the Initial Cutoff Date is attributable to loans for purchases of Motorcycles manufactured by Harley-Davidson or Buell and approximately 1.15% of the Principal Balance of the Initial Contracts as of the Initial Cutoff Date is attributable to loans to purchase Motorcycles not manufactured by Harley-Davidson or Buell.

  • Physical File Characteristics 6.2.1 The Optional Daily Usage File will be distributed to <<customer_name>> via an agreed medium with CONNECT:Direct being the preferred transport method. The Daily Usage Feed will be a variable block format (2476) with an LRECL of 2472. The data on the Daily Usage Feed will be in a non-compacted EMI format (175 byte format plus modules). It will be created on a daily basis (Monday through Friday except holidays). Details such as dataset name and delivery schedule will be addressed during negotiations of the distribution medium. There will be a maximum of one dataset per workday per OCN.

  • ODUF Physical File Characteristics 6.2.1 ODUF will be distributed to OneTone via Secure File Transfer Protocol (FTP). The ODUF feed will be a variable block format. The data on the ODUF feed will be in a non-compacted EMI format (one hundred seventy-five (175) byte format plus modules). It will be created on a daily basis Monday through Friday except holidays. Details such as dataset name and delivery schedule will be addressed during negotiations of the distribution medium. There will be a maximum of one

  • Study An application for leave of absence for professional study must be supported by a written statement indicating what study or research is to be undertaken, or, if applicable, what subjects are to be studied and at what institutions.

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