Affymetrix Inc Sample Contracts

INDENTURE AFFYMETRIX, INC.
Indenture • March 30th, 2000 • Affymetrix Inc • Services-commercial physical & biological research • New York
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Standard Contracts

AGREEMENT AND PLAN OF MERGER BY AND AMONG
Merger Agreement • November 13th, 2000 • Affymetrix Inc • Services-commercial physical & biological research • Delaware
AMENDMENT TO LEASE
Lease • July 12th, 1999 • Affymetrix Inc • Services-commercial physical & biological research
SUPPLY AGREEMENT F. Hoffmann-La Roche Ltd, Hoffmann-La Roche Inc., Syntex (U.S.A.) Inc. and Affymetrix, Inc.
Supply Agreement • October 17th, 1997 • Affymetrix Inc • Services-commercial physical & biological research • California
CREDIT AGREEMENT Dated as of October 28, 2015 among AFFYMETRIX, INC., as the Borrower, CERTAIN SUBSIDIARIES OF THE BORROWER PARTY HERETO, as the Guarantors, BANK OF AMERICA, N.A., as Administrative Agent, Swingline Lender and L/C Issuer, and THE...
Credit Agreement • October 29th, 2015 • Affymetrix Inc • Laboratory analytical instruments • New York

This CREDIT AGREEMENT is entered into as of October 28, 2015, among AFFYMETRIX, INC., a Delaware corporation (the “Borrower”), the Guarantors (defined herein), the Lenders (defined herein), and BANK OF AMERICA, N.A., as Administrative Agent, Swingline Lender and L/C Issuer.

5% Convertible Subordinated Notes due 2006 REGISTRATION RIGHTS AGREEMENT
Registration Rights Agreement • December 10th, 1999 • Affymetrix Inc • Services-commercial physical & biological research • New York
AFFYMETRIX, INC. Shares of Common Stock (par value $0.01 per share) Controlled Equity OfferingSM Sales Agreement
Sales Agreement • November 19th, 2014 • Affymetrix Inc • Laboratory analytical instruments • New York

Affymetrix, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with Cantor Fitzgerald & Co. (the “Agent”), as follows:

AGREEMENT
Licensing Agreement • July 26th, 1999 • Affymetrix Inc • Services-commercial physical & biological research
AFFYMETRIX, INC.
Manufacturing Agreement • March 31st, 1997 • Affymetrix Inc • Services-commercial physical & biological research
OF
Limited Liability Company Operating Agreement • July 26th, 1999 • Affymetrix Inc • Services-commercial physical & biological research • Delaware
* ] Confidential Treatment Requested by Affymetrix, Inc. COLLABORATION AGREEMENT
Collaboration Agreement • March 31st, 1997 • Affymetrix Inc • Services-commercial physical & biological research • California
EXHIBIT 4.3 Up to $225,000,000 Affymetrix, Inc. 4.75% Convertible Subordinated Notes due 2007 REGISTRATION RIGHTS AGREEMENT
Registration Rights Agreement • May 11th, 2000 • Affymetrix Inc • Services-commercial physical & biological research • New York
Exhibit 10.2 EXHIBIT A
Asset Purchase Agreement • July 26th, 1999 • Affymetrix Inc • Services-commercial physical & biological research

Pursuant to that certain Asset Purchase Agreement of even date herewith (the "AGREEMENT") by and among Beckman Coulter, Inc., a Delaware corporation ("SELLER") and Affymetrix, Inc., a California corporation ("BUYER"), for good and valuable consideration, the receipt and adequacy of which are hereby acknowledged, Buyer hereby does assume the Assumed Liabilities, as such term is defined in the Agreement, by and subject to the terms and conditions of the Agreement; provided, however, that Buyer shall assume such liabilities and obligations only to the extent such liabilities and obligations arise after the Closing Date (as defined in the Agreement). Except as expressly assumed herein, Buyer does not assume and shall not in any manner be responsible for any liability (including without limitation any contingent liability), obligation, lien or encumbrance of Seller.

RECITALS
Governance Agreement • October 20th, 2000 • Affymetrix Inc • Services-commercial physical & biological research • California
R E C I T A L S
License Agreement • July 26th, 1999 • Affymetrix Inc • Services-commercial physical & biological research • California
BMR-10240 SCIENCE CENTER DRIVE LP,
Lease • June 25th, 2014 • Affymetrix Inc • Laboratory analytical instruments

THIS LEASE (this “Lease”) is entered into as of this 20th day of June, 2014 (the “Execution Date”), by and between BMR-10240 SCIENCE CENTER DRIVE LP, a Delaware limited partnership (“Landlord”), and AFFYMETRIX, INC., a Delaware corporation (“Tenant”).

BETWEEN
Asset Purchase Agreement • July 26th, 1999 • Affymetrix Inc • Services-commercial physical & biological research • California
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LEASE AGREEMENT BY AND BETWEEN
Lease Agreement • August 16th, 1999 • Affymetrix Inc • Services-commercial physical & biological research • California
Exhibit 1.1 ----------- JOINT FILING AGREEMENT The undersigned hereby agree that the Statement on this Schedule 13G/A, dated February 14, 2003, (the "Schedule 13G/A"), with respect to the Common Stock, par value $.01 per share, of Affymetrix, Inc. is...
Joint Filing Agreement • February 14th, 2003 • Affymetrix Inc • Services-commercial physical & biological research

The undersigned hereby agree that the Statement on this Schedule 13G/A, dated February 14, 2003, (the "Schedule 13G/A"), with respect to the Common Stock, par value $.01 per share, of Affymetrix, Inc. is filed on behalf of each of us pursuant to and in accordance with the provisions of Rule 13d-1(k) under the Securities and Exchange Act of 1934, as amended, and that this Agreement shall be included as an Exhibit to this Schedule 13G/A. Each of the undersigned agrees to be responsible for the timely filing of the Schedule 13G/A, and for the completeness and accuracy of the information concerning itself contained therein. This Agreement may be executed in any number of counterparts, all of which taken together shall constitute one and the same instrument.

100,000,000 CREDIT FACILITY CREDIT AGREEMENT Dated as of June 25, 2012 by and among AFFYMETRIX, INC., as the Borrower, THE OTHER PERSONS PARTY HERETO THAT ARE DESIGNATED AS CREDIT PARTIES, GENERAL ELECTRIC CAPITAL CORPORATION, as Agent, and THE OTHER...
Credit Agreement • June 25th, 2012 • Affymetrix Inc • Laboratory analytical instruments • New York

This CREDIT AGREEMENT (including all exhibits and schedules hereto, as the same may be amended, modified and/or restated from time to time, this “Agreement”) is entered into as of June 25, 2012, by and among Affymetrix, Inc., a Delaware corporation (the “Borrower”), the other Persons party hereto that are designated as a “Credit Party”, General Electric Capital Corporation, a Delaware corporation (in its individual capacity, “GE Capital”), as Agent for the several financial institutions from time to time party to this Agreement (collectively, the “Lenders” and individually each a “Lender”), and the Lenders.

OFFICE LEASE KILROY REALTY KILROY UNIVERSITY CENTER KILROY REALTY, L.P., a Delaware limited partnership, as Landlord, and EBIOSCIENCE, INC., a California corporation, as Tenant.
Office Lease • March 4th, 2013 • Affymetrix Inc • Laboratory analytical instruments • California

This Office Lease (the "Lease"), dated as of the date set forth in Section 1 of the Summary of Basic Lease Information (the "Summary"), below, is made by and between KILROY REALTY, L.P., a Delaware limited partnership ("Landlord"), and EBIOSCIENCE, INC., a California corporation ("Tenant").

FORM OF SUBORDINATED INDENTURE] AFFYMETRIX, INC., Issuer and THE BANK OF NEW YORK MELLON TRUST COMPANY, N.A., Trustee INDENTURE Dated as of [—], 2012 SUBORDINATED DEBT SECURITIES
Subordinated Indenture • May 31st, 2012 • Affymetrix Inc • Laboratory analytical instruments • New York

WHEREAS, for its lawful corporate purposes, the Issuer has duly authorized the execution and delivery of the Indenture to provide for the issuance of unsecured subordinated debt securities in one or more series (the “Securities”) up to such principal amount or amounts as may from time to time be authorized in accordance with the terms of the Indenture and to provide, among other things, for the authentication, delivery and administration thereof;

AFFYMETRIX, INC. as Issuer and THE BANK OF NEW YORK TRUST COMPANY, N.A. as Trustee
Indenture • November 19th, 2007 • Affymetrix Inc • Laboratory analytical instruments • New York

INDENTURE, dated as of November 16, 2007, between Affymetrix, Inc., a corporation duly organized and existing under the laws of the State of Delaware, as Issuer (the “Company”), having its principal office at 3420 Central Expressway, Santa Clara, CA 95051, and The Bank of New York Trust Company, N.A., as Trustee (the “Trustee”).

RIGHTS AGREEMENT Dated as of October 15, 1998
Rights Agreement • October 16th, 1998 • Affymetrix Inc • Services-commercial physical & biological research • Delaware
BACKGROUND
Indemnification Agreement • March 31st, 1999 • Affymetrix Inc • Services-commercial physical & biological research • Delaware
FORM OF SENIOR INDENTURE] AFFYMETRIX, INC., Issuer and THE BANK OF NEW YORK MELLON TRUST COMPANY, N.A., Trustee INDENTURE Dated as of [—], 2012 SENIOR DEBT SECURITIES
Indenture • May 31st, 2012 • Affymetrix Inc • Laboratory analytical instruments • New York

WHEREAS, for its lawful corporate purposes, the Issuer has duly authorized the execution and delivery of the Indenture to provide for the issuance of unsecured debt securities in one or more series (the “Securities”) up to such principal amount or amounts as may from time to time be authorized in accordance with the terms of the Indenture and to provide, among other things, for the authentication, delivery and administration thereof;

AFFYMETRIX, INC., Issuer and THE BANK OF NEW YORK MELLON TRUST COMPANY, N.A., Trustee INDENTURE Dated as of June 25, 2012 SENIOR DEBT SECURITIES
Indenture • June 25th, 2012 • Affymetrix Inc • Laboratory analytical instruments • New York

INDENTURE, dated as of June 25, 2012 between AFFYMETRIX, INC. (the “Issuer”) and THE BANK OF NEW YORK MELLON TRUST COMPANY, N.A. (the “Trustee”),

AFFYMETRIX, INC.
Registration Rights Agreement • January 29th, 2004 • Affymetrix Inc • Laboratory analytical instruments • New York

Affymetrix, Inc., a Delaware corporation (the “Company”), proposes to issue and sell (such issuance and sale, the “Initial Placement”) to the Initial Purchasers (as defined below), upon the terms set forth in a purchase agreement, dated December 10, 2003 (the “Purchase Agreement”), $100,000,000 aggregate principal amount, plus an option (the “Option”) to purchase up to an additional $20,000,000 aggregate principal amount, of its 0.75% Senior Convertible Notes due 2033 (the “Securities”). The Securities will be convertible into shares of Common Stock (as defined herein), at the conversion price set forth in the Offering Memorandum (as defined herein), as the same may be adjusted from time to time pursuant to the Indenture (as defined herein). As an inducement to you to enter into the Purchase Agreement and in satisfaction of a condition to your obligations thereunder, the Company agrees with you, (i) for your benefit and (ii) for the benefit of the Holders (as defined herein) from time

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