Solexa, Inc. Sample Contracts

EXHIBIT 10.2
Registration Rights Agreement • June 4th, 2001 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • New York
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ARTICLE I DEFINITIONS
Securities Purchase Agreement • January 2nd, 2004 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • New York
RECITALS
License Agreement • April 11th, 2002 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
NET LEASE BASIC LEASE INFORMATION
Lease • May 13th, 1998 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
EXHIBIT 10.35 COMMON STOCK PURCHASE AGREEMENT
Common Stock Purchase Agreement • March 28th, 2003 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
ARTICLE I DEFINITIONS
Securities Purchase Agreement • March 12th, 2004 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • New York
ARTICLE II REPRESENTATIONS AND WARRANTIES
Securities Purchase Agreement • June 4th, 2001 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • New York
PART 4 SUBLEASE AND EMPLOYEES
Acquisition Agreement • March 24th, 1998 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
RECITALS
Securities Purchase Agreement • April 30th, 2002 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • Virginia
RECITALS
Intellectual Property Security Agreement • January 3rd, 2005 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
RECITALS
Agreement of Merger • March 27th, 1997 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • Delaware
BETWEEN
Collaboration Agreement • September 21st, 2001 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
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EMPLOYEE AGREEMENT FOR KATHY A. SAN ROMAN
Employee Agreement • May 15th, 2003 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
AGREEMENT
Registration Rights Agreement • April 30th, 2002 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • Virginia
EXHIBIT 10.13 RESEARCH COLLABORATION AGREEMENT
Research Collaboration Agreement • August 24th, 2001 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
INDEMNITY AGREEMENT
Indemnity Agreement • November 13th, 2006 • Solexa, Inc. • Medicinal chemicals & botanical products • Delaware

THIS AGREEMENT is made and entered into as of the 9th day of November, 2006 by and between SOLEXA, INC., a Delaware corporation (the “Corporation”), and ANTHONY SMITH (the “Agent”).

Solexa, Inc. Stock Option Agreement (Incentive Stock Option or Nonstatutory Stock Option)
Stock Option Agreement • June 9th, 2005 • Solexa, Inc. • Medicinal chemicals & botanical products

Pursuant to your Stock Option Grant Notice (“Grant Notice”) and this Stock Option Agreement, Solexa, Inc. (the “Company”) has granted you an option under its 2005 Equity Incentive Plan (the “Plan”) to purchase the number of shares of the Company’s Common Stock indicated in your Grant Notice at the exercise price indicated in your Grant Notice. Defined terms not explicitly defined in this Stock Option Agreement but defined in the Plan shall have the same definitions as in the Plan.

RECITALS
Development and Services Agreement • May 15th, 2002 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • California
RECITALS
Parent Support Agreement • September 30th, 2004 • Lynx Therapeutics Inc • Medicinal chemicals & botanical products • Delaware
SOLEXA, INC. and, , AS WARRANT AGENT FORM OF PREFERRED STOCK WARRANT AGREEMENT DATED AS OF
Preferred Stock Warrant Agreement • May 18th, 2006 • Solexa, Inc. • Medicinal chemicals & botanical products • New York

Preferred Stock Warrant Agreement (this “Agreement”), dated as of between Solexa, Inc., a Delaware corporation (the “Company”) and , a [corporation] [national banking association] organized and existing under the laws of and having a corporate trust office in , as warrant agent (the “Warrant Agent”).

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