Computing and plotting agreement among ranked vectors of features with matchBox.October 27th, 2020
FiledOctober 27th, 2020The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.October 27th, 2020
FiledOctober 27th, 2020The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.April 27th, 2020
FiledApril 27th, 2020The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.October 30th, 2018
FiledOctober 30th, 2018The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.April 30th, 2018
FiledApril 30th, 2018The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.October 30th, 2017
FiledOctober 30th, 2017The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.October 17th, 2016
FiledOctober 17th, 2016The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.October 13th, 2014
FiledOctober 13th, 2014The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).
Computing and plotting agreement among ranked vectors of features with matchBox.April 3rd, 2013
FiledApril 3rd, 2013The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Irizarry et al, Nat Methods (2005) [1]), and further used to compare differ- ential gene expression across distinct studies (see Ross et al, Prostate (2011) [2], and Benassi et al., Cancer Discovery (2012) [3]).