Examples of TCGA in a sentence
The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge.
Information about TCGA can be found at xxxx://xxxxxxxxxxxx.xxx.xxx.
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.
To that end, we downloaded the signatures found in the TCGA using SigProfiler [26] from synapse table syn11801497.
Regarding the runtime and scalability, resorting to subsampling above 10,000 observed mutations, as implemented in DPClust might be advisable.Another point to be vigilant about when using CloneSig, as illustrated in simulations, and based on our experience with the TCGA and the PCAWG cohorts, is that the choice of the input signatures is key to CloneSig’s optimal performances.