Examples of TCGA in a sentence
The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge.
Information about TCGA can be found at xxxx://xxxxxxxxxxxx.xxx.xxx.
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.
We could not perform a similar analysis using the TCGA with only untreated primary tumors, but this constitutes new directions and opportunities of research using CloneSig on metastatic cohorts, for instance to refine findings of [40], that compares signatures deconvoluted from the whole metastasis, and could benefit from subclonal analysis to distinguish early and late mutations.
For the larger simulated dataset, we used the dataset named ”Breast Invasive Carcinoma (TCGA, Provisional)”, which contained 958 complete samples at the time.