Protagonist Therapeutics, Inc Sample Contracts

CLASS A COMMON STOCK PURCHASE WARRANT PROTAGONIST THERAPEUTICS, INC.
Security Agreement • August 7th, 2018 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • Delaware

THIS CLASS A COMMON STOCK PURCHASE WARRANT (the “Warrant”) certifies that, for value received, or its assigns (the “Holder”) is entitled, upon the terms and subject to the limitations on exercise and the conditions hereinafter set forth, at any time on or after August , 2018 (the “Initial Exercise Date”) and on or prior to the Termination Date but not thereafter, to subscribe for and purchase from Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), up to shares (as subject to adjustment hereunder), the “Warrant Shares”) of the Company’s common stock, par value $0.00001 per share (the “Common Stock”). The purchase price of one share of Common Stock under this Warrant shall be equal to the Exercise Price, as defined in Section 2(b).

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PROTAGONIST THERAPEUTICS, INC. (a Delaware corporation) 3,530,000 Shares of Common Stock UNDERWRITING AGREEMENT
Underwriting Agreement • October 13th, 2017 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York
PROTAGONIST THERAPEUTICS, INC., Issuer AND [TRUSTEE], Trustee INDENTURE Dated as of [●], 202[●] Subordinated Debt Securities INDENTURE
Indenture • August 5th, 2022 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

INDENTURE, dated as of [●], 202 , among PROTAGONIST THERAPEUTICS, INC., a Delaware corporation (the “Company”), and [TRUSTEE] as trustee (the “Trustee”):

5,000,000 Shares Protagonist Therapeutics, Inc. UNDERWRITING AGREEMENT
Underwriting Agreement • April 10th, 2023 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York
Protagonist Therapeutics, Inc. Shares of Common Stock (par value $0.00001 per share) Controlled Equity OfferingSM Sales Agreement
Sales Agreement • September 1st, 2017 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with Cantor Fitzgerald & Co. (the “Agent”), as follows:

Protagonist Therapeutics, Inc. and _____________, As Warrant Agent Form of Preferred Stock Warrant Agreement Dated As Of __________ Protagonist Therapeutics, Inc. Form of Preferred Stock Warrant Agreement
Preferred Stock Warrant Agreement • December 10th, 2020 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

This Preferred Stock Warrant Agreement (this “Agreement”), dated as of [●], between Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), and [●], a [corporation] [national banking association] organized and existing under the laws of [●] and having a corporate trust office in [●], as warrant agent (the “Warrant Agent”).

Protagonist Therapeutics, Inc. and _____________, As Warrant Agent Form of Common Stock Warrant Agreement Dated As Of __________ Protagonist Therapeutics, Inc. Form of Common Stock Warrant Agreement
Common Stock Warrant Agreement • December 10th, 2020 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

This Common Stock Warrant Agreement (this “Agreement”), dated as of [●], between Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), and [●], a [corporation] [national banking association] organized and existing under the laws of [●] and having a corporate trust office in [●], as warrant agent (the “Warrant Agent”).

OPEN MARKET SALE AGREEMENTSM
Open Market Sale Agreement • August 5th, 2022 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), proposes, subject to the terms and conditions stated herein, to issue and sell from time to time through Jefferies LLC, as sales agent and/or principal (the “Agent”), shares of the Company’s common stock, par value $0.00001 per share (the “Common Shares”), having an aggregate offering price of up to $100,000,000 on the terms set forth in this agreement (this “Agreement”).

SECURITIES PURCHASE AGREEMENT
Securities Purchase Agreement • September 7th, 2018 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • Delaware

This Securities Purchase Agreement (this “Agreement”) is dated as of August 6, 2018 (the “Effective Date”), between Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), and each purchaser identified on the signature pages hereto (each, including its successors and assigns, a “Purchaser” and collectively the “Purchasers”).

Protagonist Therapeutics, inc. and _____________, As Warrant Agent Form of Debt Securities Warrant Agreement Dated As Of __________ Protagonist Therapeutics, Inc. Form of Debt Securities Warrant Agreement
Debt Securities Warrant Agreement • December 10th, 2020 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

This Debt Securities Warrant Agreement (this “Agreement”), dated as of [●], between Protagonist therapeutics, Inc., a Delaware corporation (the “Company”), and [●], a [corporation] [national banking association] organized and existing under the laws of [●] and having a corporate trust office in [●], as warrant agent (the “Warrant Agent”).

LEASE by and between BMR-PACIFIC RESEARCH CENTER LP, a Delaware limited partnership and PROTAGONIST THERAPEUTICS, INC., a Delaware corporation
Lease • March 7th, 2017 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS LEASE (this “Lease”) is entered into as of this 6th day of March, 2017 (the “Execution Date”), by and between BMR-PACIFIC RESEARCH CENTER LP, a Delaware limited partnership (“Landlord”), and PROTAGONIST THERAPEUTICS, INC., a Delaware corporation (“Tenant”).

INDEMNITY AGREEMENT
Indemnity Agreement • August 1st, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • Delaware

THIS INDEMNITY AGREEMENT (the “Agreement”) is made and entered into as of , 2016, between Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), and (“Indemnitee”).

CLASS B COMMON STOCK PURCHASE WARRANT PROTAGONIST THERAPEUTICS, INC.
Securities Agreement • August 7th, 2018 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • Delaware

THIS CLASS B COMMON STOCK PURCHASE WARRANT (the “Warrant”) certifies that, for value received, or its assigns (the “Holder”) is entitled, upon the terms and subject to the limitations on exercise and the conditions hereinafter set forth, at any time on or after August , 2018 (the “Initial Exercise Date”) and on or prior to the Termination Date but not thereafter, to subscribe for and purchase from Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), up to shares (as subject to adjustment hereunder), the “Warrant Shares”) of the Company’s common stock, par value $0.00001 per share (the “Common Stock”). The purchase price of one share of Common Stock under this Warrant shall be equal to the Exercise Price, as defined in Section 2(b).

EMPLOYEE SEVERANCE AGREEMENT
Employee Severance Agreement • August 1st, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • California

THIS EMPLOYEE SEVERANCE AGREEMENT (this “Agreement”) is entered into as of the 1st day of August, 2016, by and between Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”), and William Hodder (the “Employee”).

EMPLOYEE SEVERANCE AGREEMENT
Employee Severance Agreement • March 15th, 2023 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • California

THIS EMPLOYEE SEVERANCE AGREEMENT (this “Agreement”) is entered into as of the 7th day of November, 2022, by and between Protagonist Therapeutics, Inc., a Delaware corporation (the”Company”), and Arturo Molina, M.D. (the”Employee”).

AGREEMENT TO ASSIGN PATENT APPLICATIONS
Agreement to Assign Patent Applications • August 9th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

WHEREAS, the Parties have entered into a RESEARCH COLLABORATION AND LICENSE AGREEMENT dated as of June 16, 2012 as amended by Agreement on addition of Additional Collaboration Program, dated 16th September 2013 (“Collaboration Agreement”);

DATED 16 JUNE 2012 RESEARCH COLLABORATION AND LICENSE AGREEMENT
Research Collaboration and License Agreement • August 9th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

[*] = Certain confidential information contained in this document, marked by brackets, has been omitted and filed separately with the Securities and Exchange Commission pursuant to Rule 406 of the Securities Act of 1933, as amended.

CONTRACT EXTENSION LETTER OF AGREEMENT hereinafter (“Contract Extension”) made effective as of June 1st 2013 (“Contract Extension Effective Date”).
Contract Extension • August 9th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

Contract Extension to the RESEARCH COLLABORATION AND LICENSE AGREEMENT dated as of June 16, 2012 (the “Collaboration Agreement”) by and between

LICENSE AND COLLABORATION AGREEMENT BY AND BETWEEN JANSSEN BIOTECH, INC. AND PROTAGONIST THERAPEUTICS, INC.
License and Collaboration Agreement • July 31st, 2017 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

This LICENSE AND COLLABORATION AGREEMENT (this “Agreement”) is made and effective as of May 26, 2017 (the “Execution Date”), by and between Janssen Biotech, Inc., a Pennsylvania corporation (“Janssen”) and Protagonist Therapeutics, Inc., a Delaware corporation (“Protagonist”). Each of Janssen and Protagonist is sometimes referred to herein individually as a “Party” and collectively as the “Parties.”

PROTAGONIST THERAPEUTICS, INC. THIRD AMENDED AND RESTATED INVESTOR RIGHTS AGREEMENT July 31, 2016
Investor Rights Agreement • August 1st, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • Delaware

This Third Amended and Restated Investor Rights Agreement (the “Agreement”) is entered into as of this 31st day of July 2016, by and among Protagonist Therapeutics, Inc., a Delaware corporation (the “Company”) and the holders of the Preferred Stock listed on Exhibit A attached hereto (referred to herein as the “Preferred Holders” or the “Investors”).

Contract
Abandonment Agreement • August 9th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

[*] = Certain confidential information contained in this document, marked by brackets, has been omitted and filed separately with the Securities and Exchange Commission pursuant to Rule 406 of the Securities Act of 1933, as amended.

LEASE
Lease • July 11th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

This Lease (this “Lease”) is dated as of September 30, 2013, between BERRUETA FAMILY PARTNERSHIP, a California limited partnership (“Landlord”), and PROTAGONIST THERAPEUTICS, INC., a Delaware corporation (“Tenant”).

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FIRST AMENDMENT TO LEASE
Lease • May 8th, 2019 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS FIRST AMENDMENT TO LEASE (this “Amendment”) is entered into as of this 31st day of January, 2019, by and between BMR-PACIFIC RESEARCH CENTER LP, a Delaware limited partnership (“Landlord”), and PROTAGONIST THERAPEUTICS, INC., a Delaware corporation (“Tenant”).

REGISTRATION RIGHTS AGREEMENT
Registration Rights Agreement • August 7th, 2018 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • Delaware

This REGISTRATION RIGHTS AGREEMENT (the “Agreement”) is made as of August [ ], 2018 by and among Protagonist Therapeutics, Inc., a corporation organized and existing under the laws of the State of Delaware (the “Company”) and the several purchasers signatory hereto (each, a “Purchaser” and collectively, the “Purchasers”).

THIRD AMENDMENT TO LEASE
Lease • June 22nd, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS THIRD AMENDMENT TO LEASE (this “Amendment”) is dated as of August 11, 2015 (the “Effective Date”), by and between Berrueta Family L.P., a California limited partnership (“Landlord”) and Protagonist Therapeutics, Inc., a Delaware corporation (“Tenant”), with reference to the following facts and objectives:

FOURTH AMENDMENT TO LEASE
Lease • September 15th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS FOURTH AMENDMENT TO LEASE (this "Amendment") is dated as of April 27, 2016 (the "Effective Date"), by and between Berrueta Family L.P., a California limited partnership ("Landlord") and Protagonist Therapeutics, Inc., a Delaware corporation ("Tenant"), with reference to the following facts and objectives:

= CERTAIN CONFIDENTIAL INFORMATION CONTAINED IN THIS DOCUMENT, MARKED BY BRACKETS, HAS BEEN OMITTED BECAUSE IT IS BOTH (i) NOT MATERIAL AND (ii) IS THE TYPE THAT THE REGISTRANT TREATS AS PRIVATE OR CONFIDENTIAL. LICENSE AND COLLABORATION AGREEMENT by...
License and Collaboration Agreement • May 7th, 2024 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

THIS LICENSE AND COLLABORATION AGREEMENT (this “Agreement”) is entered into as of January 31, 2024 (the “Execution Date”), by and between Takeda Pharmaceuticals USA, Inc., a Delaware corporation having a place of business at 95 Hayden Avenue, Lexington, MA 02421, United States (“Takeda”), and Protagonist Therapeutics, Inc., a Delaware corporation, having a place of business at 7707 Gateway Blvd., Suite 410, Newark, CA 94560 (“Protagonist”). Takeda and Protagonist are sometimes referred to herein individually as a “Party” and collectively as the “Parties”.

SECOND AMENDMENT TO LEASE
Lease • November 3rd, 2021 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS SECOND AMENDMENT TO LEASE (this “Amendment”) is entered into as of this 2nd day of July, 2021, by and between BMR-PACIFIC RESEARCH CENTER LP, a Delaware limited partnership (“Landlord”), and PROTAGONIST THERAPEUTICS, INC., a Delaware corporation (“Tenant”).

Agreement on addition of Additional Collaboration Program hereinafter (“AACP”) made effective as of September 16th 2013 (“AACP Effective Date”).
Research Collaboration and License Agreement • July 11th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

Addition of Additional Collaboration Program to the Research Plan, an integral part of the RESEARCH COLLABORATION AND LICENSE AGREEMENT dated as of June 16, 2012 (the “Collaboration Agreement”) by and between

FIRST AMENDMENT TO THE LICENSE AND COLLABORATION AGREEMENT
License and Collaboration Agreement • August 7th, 2019 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

This Amendment (the “First Amendment”) is made and entered into as of May 7, 2019 (the “First Amendment Effective Date”) by and between (i) Protagonist Therapeutics, Inc., a Delaware corporation (“Protagonist”) and (ii) Janssen Biotech, Inc., a company organized under the laws of the Commonwealth of Pennsylvania (“Janssen”). Protagonist and Janssen are referred to collectively herein as the “Parties.”

THIRD AMENDMENT TO LEASE
Lease • August 6th, 2024 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS THIRD AMENDMENT TO LEASE (this “Amendment”) is entered into as of this 6th day of May, 2024, by and between BMR-PACIFIC RESEARCH CENTER LP, a Delaware limited partnership (“Landlord”), and PROTAGONIST THERAPEUTICS, INC., a Delaware corporation (“Tenant”).

FIRST AMENDMENT TO LEASE
Lease • July 11th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS FIRST AMENDMENT TO LEASE (this “Amendment”) is dated as of March 24, 2014 (the “Effective Date”), by and between Berrueta Family Partnership, a California limited partnership (“Landlord”) and Protagonist Therapeutics, Inc., a Delaware corporation (“Tenant”), with reference to the following facts and objectives:

Contract
Arbitration Resolution Agreement • November 3rd, 2021 • Protagonist Therapeutics, Inc • Pharmaceutical preparations • New York

[ * ] = Certain confidential information contained in this document, marked by brackets, has been omitted and filed separately with the Securities and Exchange Commission pursuant to Rule 24b-2 of the Securities Act of 1934, as amended.

SECOND AMENDMENT TO LEASE
Lease • July 11th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

THIS SECOND AMENDMENT TO LEASE (this “Amendment”) is dated and effective as of May 4, 2015, by and between Berrueta Family L.P., a California limited partnership (“Landlord”) and Protagonist Therapeutics, Inc., a Delaware corporation (“Tenant”), with reference to the following facts and objectives:

Agreement on addition of Additional Collaboration Program hereinafter (“AACP”) made effective as of September 16th 2013 (“AACP Effective Date”).
Addition of Additional Collaboration Program • August 9th, 2016 • Protagonist Therapeutics, Inc • Pharmaceutical preparations

Addition of Additional Collaboration Program to the Research Plan, an integral part of the RESEARCH COLLABORATION AND LICENSE AGREEMENT dated as of June 16, 2012 (the “Collaboration Agreement”) by and between

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