Adapting PolNet to use EPCC Object Storage Sample Clauses

Adapting PolNet to use EPCC Object Storage. PolNet (see description in section 8.1.3) as a whole is a workflow which runs inside a Docker container on the researcher’s machine and includes several stages. The system takes microscopic and clinical images, generates a model of the blood flow, allows the researcher to specify locations of objects, simulates the blood flow using HemeLB (see description in section 8.1.2), and interprets the output to produce charts. As part of CompBioMed, EPCC have developed a service called the HemeLB High Performance Offload service (Xxxx) which offloads simulation jobs to an HPC system, hence significantly reducing the time they take. The remainder of this description will illustrate the workflow using Cirrus as the HPC system, but Xxxx can be configured with multiple HPC systems, between which users can choose. To use xxx Xxxx, the client will upload their input files to the server, which copies them across to the file system on Cirrus. Xxx Xxxx then schedules a simulation on Cirrus. When the simulation runs, it will read the input files from the file system, then write the output to the file system. Once the simulation is complete, xxx Xxxx will retrieve the files from the Cirrus file system, and store them in its own storage, and notify the client the job has completed. The client then has to retrieve the files from the web server, and then delete the job, which will allow the storage to be reclaimed.
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