Population genetic analyses Sample Clauses

Population genetic analyses. For each genotype dataset, 10 subdatasets of 5,000 randomly chosen SNPs were created and analyzed with the Bayesian clustering approach implemented in STRUCTURE (Xxxxxxxxx et al. 2000). For each value of K (number of potential ancestral populations, which ranged from 1 to the number of groups of area and size class), the genetic ancestry of each individual was estimated based on the admixture model without using sampling location as prior; estimations were obtained from 300,000 iterations that followed a burn-in period of 100,000 iterations. The 10 subdatasets obtained for each value of K were analyzed with XXXXXX (Xxxxxxxxx & Xxxxxxxxx 2007) to identify common modes, and results were plotted using DISTRUCT (Xxxxxxxxx 2004). Best K was identified according to the Evanno method (Xxxxxx et al. 2005) as implemented in StructureHarvester (Xxxx & xxxXxxxx 2012). Principal component analyses (PCA) were performed with the R package adegenet (Jombart & Xxxxx 2011) without any a priori population definition.
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Related to Population genetic analyses

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