Literature Cited. 15 1 Introduction The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Xxxxxxxx et al, Nat Methods (2005) [1]), and further used to compare differential gene expression across distinct studies (see Xxxx et al, Prostate (2011) [2], and Xxxxxxx et al., Cancer Discovery (2012) [3]). The matchBox package contains several utilities enabling the following:
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Samples: bioc.ism.ac.jp, bioconductor.statistik.tu-dortmund.de
Literature Cited. 15 1 Introduction The matchBox package allows to compare ranked vectors (i.e. by differential expression) of features (i.e. genes, or probe sets), using Correspondence-At-the-Top (CAT) curves. A CAT curve displays the overlapping proportion between two ranked vectors of identifiers against the number of considered features. This techiques was originally envisaged for comparing differential gene expression results obtained from distinct microarray platforms in different laboratories (see Xxxxxxxx et al, Nat Methods (2005) [1]), and further used to compare differential gene expression across distinct studies (see Xxxx Ross et al, Prostate (2011) [2], and Xxxxxxx et al., Cancer Discovery (2012) [3]). The matchBox package contains several utilities enabling the following:
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Samples: bioconductor.org, bioconductor.statistik.tu-dortmund.de