Molecular Templates, Inc. Sample Contracts

8,300,000 shares of Common Stock and Warrants to Purchase 8,300,000 Shares of Common Stock Threshold Pharmaceuticals, Inc. UNDERWRITING AGREEMENT
Underwriting Agreement • February 12th, 2015 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

The undersigned acknowledges and agrees that written notice by Jefferies to the Company of any extension of the 90-day initial lock-up period will be deemed to have been given to, and received by, the undersigned. The undersigned further agrees that, prior to engaging in any transaction or taking any other action that is subject to the terms of this letter agreement during the period from the date of this letter agreement through the close of trading on the date that is the 34th day following the expiration of the 90-day initial lock-up period, the undersigned will give notice thereof to the Company and will not consummate any such transaction or take any such action unless the undersigned has received written confirmation from the Company that the Lock-Up Period has expired.

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MOLECULAR TEMPLATES, INC. INDEMNIFICATION AGREEMENT
Indemnification Agreement • May 15th, 2017 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Delaware

This Indemnification Agreement (“Agreement”) is made as of by and between Molecular Templates, Inc., a Delaware corporation (the “Company”), and (“Indemnitee”).

THRESHOLD PHARMACEUTICALS, INC., Issuer AND [TRUSTEE], Trustee INDENTURE Dated as of [·], 20__ Debt Securities
Indenture • November 2nd, 2015 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

Indenture, dated as of [·], 20__, among Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”), and [Trustee], as trustee (the “Trustee”):

Threshold Pharmaceuticals, Inc. and _____________, As Warrant Agent Form Of Common Stock Warrant Agreement Dated As Of __________
Warrant Agreement • November 2nd, 2015 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

This Common Stock Warrant Agreement (this “Agreement”), dated as of [●], between Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”) and [●], a [corporation] [national banking association] organized and existing under the laws of [●] and having a corporate trust office in [●], as warrant agent (the “Warrant Agent”).

Molecular Templates, Inc. Shares of Common Stock (par value $0.001 per share) Controlled Equity OfferingSM Sales Agreement
Molecular Templates, Inc. • December 21st, 2018 • Pharmaceutical preparations • New York

Molecular Templates, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with Cantor Fitzgerald & Co. (the “Agent”), as follows:

THRESHOLD PHARMACEUTICALS, INC. AND , AS WARRANT AGENT FORM OF COMMON STOCK WARRANT AGREEMENT DATED AS OF
Common Stock Warrant Agreement • April 7th, 2014 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

THIS COMMON STOCK WARRANT AGREEMENT (this “Agreement”), dated as of [•], between THRESHOLD PHARMACEUTICALS, INC., a Delaware corporation (the “Company”) and [•], a [corporation] [national banking association] organized and existing under the laws of [•] and having a corporate trust office in [•], as warrant agent (the “Warrant Agent”).

Threshold Pharmaceuticals, Inc. and _____________, As Warrant Agent Form Of Debt Securities Warrant Agreement Dated As Of __________
Warrant Agreement • November 2nd, 2015 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

This Debt Securities Warrant Agreement (this “Agreement”), dated as of [●], between Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”) and [●], a [corporation] [national banking association] organized and existing under the laws of [●] and having a corporate trust office in [●], as warrant agent (the “Warrant Agent”).

Shares of Common Stock Molecular Templates, Inc. UNDERWRITING AGREEMENT
Underwriting Agreement • February 22nd, 2021 • Molecular Templates, Inc. • Pharmaceutical preparations • New York
MOLECULAR TEMPLATES, INC. Common Stock (par value $0.001 per share) SALES AGREEMENT
Sales Agreement • August 7th, 2020 • Molecular Templates, Inc. • Pharmaceutical preparations • New York

Molecular Templates, Inc. (the “Company”), confirms its agreement (this “Agreement”) with Cowen and Company, LLC (“Cowen”), as follows:

Threshold Pharmaceuticals, Inc. and _____________, As Warrant Agent Form Of Preferred Stock Warrant Agreement Dated As Of __________
Preferred Stock Warrant Agreement • November 2nd, 2015 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

This Preferred Stock Warrant Agreement (this “Agreement”), dated as of [●], between Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”) and [●], a [corporation] [national banking association] organized and existing under the laws of [●] and having a corporate trust office in [●], as warrant agent (the “Warrant Agent”).

AMENDED AND RESTATED LOAN AND SECURITY AGREEMENT
Loan and Security Agreement • May 15th, 2017 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Delaware

THIS AMENDED AND RESTATED LOAN AND SECURITY AGREEMENT (this “Agreement”) dated as of April 30, 2015 (the “Effective Date”) between SILICON VALLEY BANK, a California corporation (“Bank”), and MOLECULAR TEMPLATES, INC., a Delaware corporation (“Borrower”), provides the terms on which Bank shall lend to Borrower and Borrower shall repay Bank. The parties agree as follows:

THRESHOLD PHARMACEUTICALS, INC. AND , AS WARRANT AGENT FORM OF DEBT SECURITIES WARRANT AGREEMENT DATED AS OF
Securities Warrant Agreement • April 7th, 2014 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

THIS DEBT SECURITIES WARRANT AGREEMENT (this “Agreement”), dated as of [•], between THRESHOLD PHARMACEUTICALS, INC., a Delaware corporation (the “Company”) and [•], a [corporation] [national banking association] organized and existing under the laws of [•] and having a corporate trust office in [•], as warrant agent (the “Warrant Agent”).

At Market Issuance Sales Agreement
Threshold Pharmaceuticals Inc • August 1st, 2014 • Pharmaceutical preparations • New York

Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with MLV & Co. LLC (the “MLV”), as follows:

FORM OF INDEMNIFICATION AGREEMENT
Form of Indemnification Agreement • August 7th, 2017 • Molecular Templates, Inc. • Pharmaceutical preparations • Delaware

This Indemnification Agreement (“Agreement”) is made as of [•], 2017 by and between Molecular Templates, Inc., (formerly, Threshold Pharmaceuticals, Inc.) a Delaware corporation (the “Company”), and [•] (the “Indemnitee”). This Agreement supersedes and replaces any and all previous Agreements between the Company and Indemnitee covering the subject matter of this Agreement.

MOLECULAR TEMPLATES, INC.
Stock Option Agreement • May 15th, 2017 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Texas

Unless otherwise defined herein, the terms defined in the 2009 Stock Plan (the “Plan”) shall have the same defined meanings in this Stock Option Agreement (the “Option Agreement”).

INDEMNIFICATION AGREEMENT
Indemnification Agreement • December 6th, 2004 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Delaware

AGREEMENT, made this day of , 2004, between Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”), and (the “Indemnitee”).

ARTICLE I SUMMARY OF BASIC SUBLEASE PROVISIONS
Work Letter Agreement • December 6th, 2004 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • California
THRESHOLD PHARMACEUTICALS, INC. $50,000,000 SALES AGREEMENT
Threshold Pharmaceuticals Inc • November 2nd, 2015 • Pharmaceutical preparations • New York

Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”), confirms its agreement (this “Agreement”) with Cowen and Company, LLC (“Cowen”), as follows:

SECURITIES PURCHASE AGREEMENT
Securities Purchase Agreement • September 30th, 2009 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York
WARRANT TO PURCHASE COMMON STOCK OR PREFUNDED WARRANTS MOLECULAR TEMPLATES, INC.
Securities Purchase Agreement • March 28th, 2024 • Molecular Templates, Inc. • Pharmaceutical preparations • New York

THIS COMMON STOCK PURCHASE WARRANT (the “Warrant”) certifies that, for value received, [ ] or its assigns (the “Holder”) is entitled, upon the terms and subject to the limitations on exercise and the conditions hereinafter set forth, at any time on or after the date hereof (the “Initial Exercise Date”) and until 5:00 p.m. (New York City time) on [ ], 20291 (the “Termination Date”) but not thereafter, to subscribe for and purchase from Molecular Templates, Inc., a Delaware corporation (the “Company”), up to [ ] shares (as subject to adjustment hereunder, the “Warrant Shares”) of Common Stock or Prefunded Warrants (as defined below) to purchase up to the same number of Warrant Shares. The purchase price of one share of Common Stock or Prefunded Warrant under this Warrant shall be equal to the Exercise Price, as defined in Section 2(b).

THRESHOLD PHARMACEUTICALS, INC. AMENDED AND RESTATED CHANGE OF CONTROL SEVERANCE AGREEMENT
Change of Control Severance Agreement • April 12th, 2012 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • California

The Amended and Restated Change of Control Severance Agreement (the “Agreement”) is made and entered into effective as of __________ (the “Effective Date”), by and between ___________ (the “Employee”) and Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”). Certain capitalized terms used in this Agreement are defined in Section 1 below.

FIRST AMENDMENT TO LEASE
Lease • May 15th, 2017 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Texas

THIS LEASE, dated October 1, 2016 for reference purposes only, is made by and between NW AUSTIN OFFICE PARTNERS LLC, a Delaware limited liability company (“Landlord”), and MOLECULAR TEMPLATES, INC., a Delaware corporation (“Tenant”), to be effective and binding upon the parties as of the date the last of the designated signatories to this Lease shall have executed this Lease (the “Effective Date of this Lease”).

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STATE OF TEXAS COUNTY OF TRAVIS
Cancer Research Grant Contract • March 29th, 2024 • Molecular Templates, Inc. • Pharmaceutical preparations • Texas

This CANCER RESEARCH GRANT CONTRACT (“Contract”) is by and between the Cancer Prevention and Research Institute of Texas (“CPRIT”), hereinafter referred to as the “INSTITUTE”, acting through its Chief Executive Officer, and Molecular Templates, Inc., hereinafter referred to as the “RECIPIENT”, acting through its authorized signing official.

THRESHOLD PHARMACEUTICALS, INC. and MELLON INVESTOR SERVICES LLC Rights Agent PREFERRED SHARES RIGHTS AGREEMENT Dated as of August 8, 2006
Preferred Shares Rights Agreement • August 9th, 2006 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

This Preferred Shared Rights Agreement, dated as of August 8, 2006, is made between Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”), and Mellon Investor Services LLC, a New Jersey limited liability company (the “Rights Agent”).

MOLECULAR TEMPLATES, INC. AMENDED AND RESTATED EXECUTIVE EMPLOYMENT AGREEMENT
Executive Employment Agreement • May 15th, 2017 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Texas

THIS AMENDED AND RESTATED EXECUTIVE EMPLOYMENT AGREEMENT (this “Agreement”) is entered into as of April 22, 2016 (the “Effective Date”) by and between Molecular Templates, Inc., a Delaware corporation (the “Company”), and Jason Kim (“Executive”).

MOlecular templates, inc.
Sales Agreement • August 7th, 2020 • Molecular Templates, Inc. • Pharmaceutical preparations • New York

Molecular Templates, Inc. (the “Company”), confirms its agreement (this “Agreement”) with Cowen and Company, LLC (“Cowen”), as follows:

WARRANT TO PURCHASE STOCK
Warrant to Purchase Stock • April 9th, 2004 • Threshold Pharmaceuticals Inc • California

THIS WARRANT AND THE SHARES ISSUABLE HEREUNDER HAVE NOT BEEN REGISTERED UNDER THE SECURITIES ACT OF 1933, AS AMENDED (THE “ACT”), OR THE SECURITIES LAWS OF ANY STATE AND, EXCEPT AND PURSUANT TO THE PROVISIONS OF ARTICLE 5 BELOW, MAY NOT BE OFFERED, SOLD OR OTHERWISE TRANSFERRED, PLEDGED OR HYPOTHECATED UNLESS AND UNTIL REGISTERED UNDER SAID ACT AND APPLICABLE STATE SECURITIES LAW OR, IN THE OPINION OF LEGAL COUNSEL IN FORM AND SUBSTANCE SATISFACTORY TO THE ISSUER OF THESE SECURITIES, SUCH OFFER, SALE OR TRANSFER, PLEDGE OR HYPOTHECATION IS EXEMPT FROM REGISTRATION.

6,000,000 Shares of Common Stock Molecular Templates, Inc. UNDERWRITING AGREEMENT
Underwriting Agreement • November 25th, 2019 • Molecular Templates, Inc. • Pharmaceutical preparations • New York
Threshold Pharmaceuticals, Inc. [ ] Shares Common Stock UNDERWRITING AGREEMENT dated [ ], 2004 Banc of America Securities LLC CIBC World Markets Corp. Lazard Freres & Co. LLC William Blair & Company L.L.C.
Underwriting Agreement • January 11th, 2005 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

If (i) the Company issues an earnings release or material news, or a material event relating to the Company occurs, during the last 17 days of the 180-day restricted period, or (ii) prior to the expiration of the 180-day restricted period, the Company announces that it will release earnings results during the 16-day period beginning on the last day of the lock-up period, the restrictions imposed by this agreement shall continue to apply until the expiration of the 18-day period beginning on the issuance of the earnings release or the occurrence of the material news or material event; provided however, that this sentence shall not apply if any research published or distributed by any Underwriter on the Company would be compliant under Rule 139 of the Securities Act and the Company’s securities are actively traded as defined in Rule 101(c)(1) of Regulation M of the Exchange Act.

CERTAIN INFORMATION IN THIS EXHIBIT HAS BEEN OMITTED AND FILED SEPARATELY WITH THE COMMISSION. CONFIDENTIAL TRATMENT HAS BEEN REQUESTED WITH RESPECT TO THE OMITTED PORTIONS
Development Agreement • January 28th, 2005 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • California

THIS AGREEMENT is entered into as of the 30th day of November, 2004, (“Effective Date”) by and between THRESHOLD PHARMACEUTICALS, INC., a Delaware corporation having its principal place of business at 951 Gateway Blvd., Suite 3A, South San Francisco, CA 94080, U.S.A. (“Threshold”), and MEDIBIC CO., LTD., a Japan corporation, having its head office at Daido Seimei Kasumigaseki Building 8F, 1-4-2 Kasumigaseki, Chiyoda-ku, Tokyo 100-0013 Japan (“MediBIC”).

6,250,000] Shares THRESHOLD PHARMACEUTICALS, INC. COMMON STOCK ($0.001 PAR VALUE) UNDERWRITING AGREEMENT
Underwriting Agreement • October 7th, 2005 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • New York

The undersigned understands that Morgan Stanley & Co. Incorporated (“Morgan Stanley”) proposes to enter into an Underwriting Agreement (the “Underwriting Agreement”) with Threshold Pharmaceuticals, Inc., a Delaware corporation (the “Company”), providing for the public offering (the “Public Offering”) by the several Underwriters, including Morgan Stanley, CIBC World Markets Corp. and Lazard Capital Markets LLC (the “Underwriters”), of shares of the Common Stock (par value $0.001) of the Company (the “Common Stock”).

SUBLEASE
Sublease • November 3rd, 2011 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • California

THIS SUBLEASE (the “Sublease”), dated for reference purposes only as of July 25, 2011 (the “Execution Date”), is made by and between EXELIXIS INC., a Delaware corporation (“Sublandlord”), and THRESHOLD PHARMACEUTICALS, INC., a Delaware corporation (“Subtenant”).

MULTI-TARGET COLLABORATION AND LICENSE AGREEMENT Between MOLECULAR TEMPLATES, INC. and MILLENNIUM PHARMACEUTICALS, INC. Portions of this Exhibit, indicated by the mark “[***],” were omitted and have been filed separately with the Securities and...
License Agreement • October 17th, 2017 • Molecular Templates, Inc. • Pharmaceutical preparations • Massachusetts

This Multi-Target Collaboration and License Agreement (this “Agreement”) is entered into as of June 23, 2017 (the “Effective Date”) by and between MOLECULAR TEMPLATES, INC., a Delaware corporation, having its principal place of business at 9301 Amberglen Boulevard, Suite 100, Austin, TX 78729 (“MTEM”) and MILLENNIUM PHARMACEUTICALS, INC., a Delaware corporation, a wholly-owned subsidiary of Takeda Pharmaceutical Company Limited, having its principal place of business at 40 Landsdowne Street, Cambridge, MA 02139 (“Takeda”). MTEM and Takeda may sometimes individually be referred to hereafter as a “Party” or collectively as the “Parties.”

SUPPORT AGREEMENT
Support Agreement • March 17th, 2017 • Threshold Pharmaceuticals Inc • Pharmaceutical preparations • Delaware

This SUPPORT AGREEMENT (this “Agreement”), is made as of March 16, 2017, by and between Threshold Pharmaceuticals, Inc. (“Threshold”) and the Person set forth on Schedule A hereto (the “Stockholder”).

REGISTRATION RIGHTS AGREEMENT
Registration Rights Agreement • March 2nd, 2018 • Molecular Templates, Inc. • Pharmaceutical preparations • Delaware

This Registration Rights Agreement (the “Agreement”) is made and entered into as of February 27, 2018 by and among Molecular Templates, Inc., a Delaware corporation (the “Company”), and Perceptive Credit Holdings II, LP, a Delaware limited partnership (“Perceptive”). The Company, Perceptive and any other Investor who becomes a party to this Agreement may each be referred to herein individually as a “Party” and collectively as the “Parties.” This Agreement is made pursuant to that certain Credit Agreement and Guaranty dated as of the date hereof by and among the Company and Perceptive (the “Credit Agreement”) and shall be effective as of the Closing Date. Capitalized terms used herein have the respective meanings ascribed thereto in the Credit Agreement unless otherwise defined herein.

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