Experimental Factor Ontology Sample Clauses

Experimental Factor Ontology. The Experimental Factor Ontology (EFO)[33] is an application focused ontology modeling the experimental variables in the Gene Expression Atlas. The ontology describes cross-product classes from reference ontologies in area such as disease, cell line, cell type and anatomy. EFO combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team. The EFO is application ontology – an ontology engineered for domain specific use or application focus and whose scope is specified through testable use cases and which maps to reference or canonical ontologies. The ontology is kept up-to-date since the last updated version of the EFO ontology is version 2.30 on November 2012. The EFO methodology reuses reference ontologies (full list available at xxxx://xxx.xxx.xx.xx/efo/metadata), where they exist, and where they describe classes that are in scope for EFO. To promote interoperability with the OBO Foundry ontologies, EFO is using the BFO as an upper ontology. Furthermore, the EFO Ontology is used in the following projects: • ISA software suite • NCBO Annotator • NCBO Resource Index • OntoCAT • MeRy-B • Neural ElectroMagnetic Ontologies • OntoMaton
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