Genome Therapeutics Corp Sample Contracts

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EXHIBIT 10.3
Registration Rights Agreement • March 16th, 2000 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • Massachusetts
AMONG
Loan Agreement • November 28th, 1997 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances
RECITALS
Stock Purchase Agreement • March 31st, 2003 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • Delaware
Recitals
Purchase Agreement • March 6th, 2002 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • New York
UNDERWRITING AGREEMENT
Underwriting Agreement • April 6th, 2000 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • New York
Exhibit 10.47 COLLABORATION AND LICENSE AGREEMENT
Collaboration and License Agreement • January 11th, 2000 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • Massachusetts
PURCHASE AGREEMENT
Purchase Agreement • April 12th, 2006 • Oscient Pharmaceuticals Corp • Pharmaceutical preparations • New York

THIS AGREEMENT is made as of the 5th day of April, 2006, by and between Oscient Pharmaceuticals Corporation (the “Company”), a corporation organized under the laws of The Commonwealth of Massachusetts, with its principal offices at 1000 Winter Street, Suite 2200, Waltham, MA 02451, and the purchaser whose name and address is set forth on the signature page hereof (the “Purchaser”).

Exhibit 1 JOINT FILING AGREEMENT In accordance with Rule 13d-1(k) (1) (iii) under the Securities Exchange Act of 1934, as amended, the persons named below agree to the joint filing on behalf of each of them of a Statement on Schedule 13G/A filed on...
Joint Filing Agreement • June 10th, 2003 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances

In accordance with Rule 13d-1(k) (1) (iii) under the Securities Exchange Act of 1934, as amended, the persons named below agree to the joint filing on behalf of each of them of a Statement on Schedule 13G/A filed on June 10, 2003 (including amendments thereto) with respect to the common stock of Genome Therapeutics Corp.

PLEDGE AGREEMENT
Pledge Agreement • August 9th, 2004 • Oscient Pharmaceuticals Corp • In vitro & in vivo diagnostic substances • New York

PLEDGE AGREEMENT, dated as of May 10, 2004 (this “Agreement”), by and among Oscient Pharmaceuticals Corporation, a corporation duly organized and existing under the laws of the Commonwealth of Massachusetts (the “Grantor”), having its principal office at 100 Beaver Street, Waltham, MA 02453, and U.S. Bank National Association (“U.S. Bank”), a national banking association, (i) in its capacity as trustee (the “Trustee”) for the holders (the “Holders”) of the Securities (as hereinafter defined) issued by the Grantor under the Indenture referred to below and (ii) in its individual capacity, as securities intermediary (in such capacity, the “Pledged Securities Intermediary”) at its office at One Federal Street, 3rd Floor, Boston, Massachusetts 02110 (the “Account Office”) with respect to the Pledge Account (as hereinafter defined). Capitalized terms used herein and not otherwise defined herein shall have the meanings given to such terms in the Indenture.

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EXHIBIT 10.28 AGREEMENT
28 Agreement • February 12th, 1996 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • Massachusetts
3.50% Convertible Senior Notes Due 2011
Oscient Pharmaceuticals Corp • April 18th, 2007 • Pharmaceutical preparations • New York

INDENTURE, dated as of , 2007, between Oscient Pharmaceuticals Corporation, a corporation duly organized and existing under the laws of The Commonwealth of Massachusetts, as Issuer (the “Company”), having its principal office at 1000 Winter Street, Suite 2200, Waltham, MA 02451 and U.S. Bank National Association, a national banking association, as Trustee (the “Trustee”).

OSCIENT PHARMACEUTICALS CORPORATION as Issuer and GUARDIAN II ACQUISITION CORPORATION as Guarantor and U.S. BANK NATIONAL ASSOCIATION as Trustee INDENTURE Dated as of [*] 12.50% Convertible Senior Notes Due 2011
Indenture • November 7th, 2008 • Oscient Pharmaceuticals Corp • Pharmaceutical preparations • New York

INDENTURE, dated as of [*], between Oscient Pharmaceuticals Corporation, a corporation duly organized and existing under the laws of The Commonwealth of Massachusetts, as Issuer (the “Company”), having its principal office at 1000 Winter Street, Suite 2200, Waltham, MA 02451, Guardian II Acquisition Corporation, a Delaware Corporation, having its principal office at 1000 Winter Street, Suite 2200, Waltham, MA 02451, as Guarantor (the “Guarantor”) and U.S. Bank National Association, a national banking association, as Trustee (the “Trustee”).

3.50% Convertible Senior Notes Due 2011
Indenture • May 4th, 2007 • Oscient Pharmaceuticals Corp • Pharmaceutical preparations • New York

INDENTURE, dated as of May 1, 2007, between Oscient Pharmaceuticals Corporation, a corporation duly organized and existing under the laws of The Commonwealth of Massachusetts, as Issuer (the “Company”), having its principal office at 1000 Winter Street, Suite 2200, Waltham, MA 02451 and U.S. Bank National Association, a national banking association, as Trustee (the “Trustee”).

OSCIENT PHARMACEUTICALS CORPORATION 3½% Senior Convertible Notes due 2011 REGISTRATION RIGHTS AGREEMENT May 10, 2004
Registration Rights Agreement • August 9th, 2004 • Oscient Pharmaceuticals Corp • In vitro & in vivo diagnostic substances • New York

Oscient Pharmaceuticals Corporation, a Massachusetts corporation (the “Company”), proposes to issue and sell (such issuance and sale, the “Initial Placement”) to the Initial Purchasers (as defined below), upon the terms set forth in a purchase agreement, dated May 4, 2004 (the “Purchase Agreement”), $125,000,000 aggregate principal amount, plus an option (the “Option”) to purchase up to an additional $18,750,000 aggregate principal amount, of its 3½% Senior Convertible Notes due 2011 (the “Securities”). The Securities will be convertible into shares of Common Stock (as defined herein), at the conversion price set forth in the Offering Memorandum (as defined herein), as the same may be adjusted from time to time pursuant to the Indenture (as defined herein). As an inducement to you to enter into the Purchase Agreement and in satisfaction of a condition to your obligations thereunder, the Company agrees with you, (i) for your benefit and (ii) for the benefit of the Holders (as defined he

DEALER MANAGER AGREEMENT October , 2008
Dealer Manager Agreement • October 21st, 2008 • Oscient Pharmaceuticals Corp • Pharmaceutical preparations • New York
AMONG
Collaboration and License Agreement • February 13th, 1996 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • Massachusetts
BETWEEN
Collaboration and License Agreement • April 10th, 2000 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • Massachusetts
VICURON PHARMACEUTICALS INC. AND OSCIENT PHARMACEUTICALS CORPORATION ASSIGNMENT AND TERMINATION AGREEMENT
Assignment and Termination Agreement • May 10th, 2006 • Oscient Pharmaceuticals Corp • Pharmaceutical preparations • New York

THIS ASSIGNMENT AND TERMINATION AGREEMENT (the “Agreement”) is made effective as of the 3RD day of February, 2006 (the “Effective Date”) by and between Oscient Pharmaceuticals Corporation (formerly known as Genome Therapeutics Corporation), a Massachusetts corporation having its principal place of business at 1000 Winter Street, Suite 2200, Waltham, MA 02451, USA (“Oscient”) and Vicuron Pharmaceuticals Inc., a Delaware corporation with its principal place of business at 455 South Gulph Road, Suite 305, King of Prussia, PA 19406, USA (for itself and as successor-in-interest to Biosearch Italia, “Vicuron”). Oscient and Vicuron are sometimes referred to herein individually as a “Party” and collectively as the “Parties.”

Re: Second Amendment to Employment Agreement Dear Steve:
Employment Agreement • August 9th, 2006 • Oscient Pharmaceuticals Corp • Pharmaceutical preparations

This Agreement amends the Employment Agreement between you and Oscient Pharmaceuticals Corporation (the “Company”) dated as of June 15, 2001, as subsequently amended by the Amendment to Employment Agreement dated as of February 5, 2004 (as so amended, the “Employment Agreement”). Capitalized terms in this Agreement shall have the meaning ascribed to them in the Employment Agreement unless otherwise expressly provided in this Agreement.

BIOSEARCH ITALIA, S.P.A. AND GENOME THERAPEUTICS CORPORATION
License and Supply Agreement • November 12th, 2002 • Genome Therapeutics Corp • In vitro & in vivo diagnostic substances • New York
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