Organisation of this report Sample Clauses

Organisation of this report. In the following chapters, the main results of the work effort are summarised. A brief description the HPC platform which hosted the computations, is carried out together with the dependencies of the application HemoCell. The scalability, profiling results are then presented. The following chapter is dedicated to the optimisation effort. The last chapter consists of suggestions of alternatives to Palabos, the LBM library which lies at the heart of the HemoCell code. The HemoCell code (V1.4) was retrieved from the HemoCell webpage (xxx.xxxxxxxx.xx) and was setup from source. With respect to the compiling and running requirements, the following dependencies versions in Table 1 were used. Dependency Version Intel C/C++ Compiler 18.0.5 Intel MPI 2018 Update 1 Cmake 3.10.0 HDF5 1.10.2 Palabos 2.0 7.1 Table 1 HemoCell dependencies Table 2 Main characteristics of the Intel processor used for Task 2.6 1. 1e-6 </nuP> <!-- Dynamic viscosity of blood plasma, physical units [m^2/s]--> <dx> 5e-7 </dx> <!--Physical length of 1 Lattice Unit --> <dt> 1e-7 </dt> <!-- Time step for the LBM system. A negative value will set Tau=1 and calc. the corresponding time-step. --> <refDir> 1 </refDir> <!-- Used for resloution setting and Re calculation as well --> <refDirN> 64 </refDirN> <!-- Number of numerical cell in the reference direction --> <blockSize> -1 </blockSize> <kBT>4.100531391e-21</kBT> <!-- in SI, m2 kg s-2 (or J) for T=300 --> <Re> 10 </Re> <!--Xxxxxxxx number--> <particleEnvelope> 25 </particleEnvelope> <kRep> 2e-22 </kRep> <!-- Repulsion Constant --> <RepCutoff> 0.7 </RepCutoff> <!-- RepulsionCutoff --> </domain> The scalability abilities of the HemoCell code are investigated in this chapter. First, the strong scalability is presented. The experiments were performed on Intel Skylake nodes (Intel Xeon 6130, see Table 2). The efficiency drops below 70% within one node which can be improved. This strongly suggests that the ratio compute per core is decreasing rapidly and the synchronisation time takes an important part in the execution time. In the following, experiments on the weak scalability are performed in the same settings. Figure 5 shows the overall weak scaling performance of the test case which was provided on demand by UVA. The test cases were generated by doubling the size of the computational domain and filling it with blood cells such that the density of blood cells remains constant. The efficiency is settling around 70% for 512 cores. To further understa...
Sample 1
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Organisation of this report. This report will first outline the existing marine infrastructure initiatives, and their specific remits, with a focus on their long-term sustainability. The following section will then summarise the progress made within FixO3 to engage with these initiatives, primarily at a data manager / observatory level. The final section will summarise the formal agreements made with some of these initiatives to ensure the continued delivery of FixO3 observatory data.
Sample 1

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