Components of the “Multi-omics Research Environment Sample Clauses

Components of the “Multi-omics Research Environment tranSMART is a knowledge management application that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data. Within the “Multi-omics Research Environment” tranSMART is a core component for the clinical data analysis. A detailed description of tranSMART analysis options for the vertical projects is provided in deliverable D13.2. R Cloud gives the opportunity to use any of the existing R packages for the data analysis. In addition, R Cloud supports parallel R computing. For example, a researcher from a vertical project can install and use R package “RobustRankAggreg” developed by University of Tartu (Xxxxx et. al), get the list of genes/transcripts and store them back into tranSMART with the scores calculated by the Robust Rank Aggregation algorithm. Docker is an open-source project that automates the deployment of applications inside software containers, by providing ad additional layer of abstraction and automation of operating-system-level virtualization. From the end-user perspective Docker encapsulates software dependencies, for example those dependencies are especially complex in case of next generation sequencing pipelines, and provides ready to go solutions that can be used without time-consuming pipeline installation process. A Docker cluster is a cloud platform solution – a cluster of VMs under orchestration of OpenLava (LSF) with Docker installed on each VM. Docker cluster gives the possibility to run dockerized analysis pipelines in parallel. Both R Cloud and tranSMART’s analytical part are mostly supposed to be used for the down- stream analysis. Non-massive data like microarray results can also be analysed in the R Cloud; however, vast amounts of data from next generation sequencing at the pre- processing stage need a special approach and a lot of computational power. For such data we have provided a Docker cluster solution with a number of pipelines adapted for cloud computing. At the moment we have pipelines to deal with genomics, transcriptomics, small RNAs sequencing, proteomics and metabolomics data. All the mentioned components make up a very flexible system that can satisfy all possible needs of the vertical projects. The new dockerized pipelines can be added to the Docker cluster by vertical project request.
Sample 1
AutoNDA by SimpleDocs
Components of the “Multi-omics Research Environment. More details about MORE components and data security issues are available in the deliverable D13.3. Docker cluster consists of VMs with installed docker software and adapted for parallel computing and dockerized -omics data analysis pipelines: ▪ iRAP pipeline to analyse transcriptomics sequencing data; ▪ NGSeasy pipeline to analyse genomics sequencing data; ▪ MZmine2 to analyse proteomics and metabolomics LC-MS data; ▪ Sequence Imp pipeline to analyse microRNA sequencing data; ▪ LIMIX pipeline for the different types of quantitative trait locus (QTL) analysis.
Sample 1
Components of the “Multi-omics Research Environment v1 We have opened the discussion with work-package 14 concerning any possible security issues, especially in the light of the ongoing security and privacy requirements analysis. At the current version of the "Multi-omics Research Environment" (v1) our efforts for providing a secure solution include the following:
Sample 1

Related to Components of the “Multi-omics Research Environment

  • Operating Environment Subscriber is solely responsible for acquiring, installing, operating and maintaining the hardware, software and Internet Browser environment necessary to access the Site and use the Services. Information on operating environment requirements can be located on the Site.

  • Selection of Subcontractors, Procurement of Materials and Leasing of Equipment The contractor shall not discriminate on the grounds of race, color, religion, sex, national origin, age or disability in the selection and retention of subcontractors, including procurement of materials and leases of equipment. The contractor shall take all necessary and reasonable steps to ensure nondiscrimination in the administration of this contract.

  • Vaccination and Inoculation (a) The Employer agrees to take all reasonable precautions, including in-service seminars, to limit the spread of infectious diseases among employees.

  • Working Environment The Parties agree that a safe and clean working environment is essential in order to carry out work assignments in a satisfactory manner. It will be the Employer's responsibility to ensure that all working areas and Employer-owned vehicles are maintained in a safe and clean condition.

  • Safe Working Environment ACM does everything reasonably possible to provide a safe working environment for all of its stakeholders including Suppliers and its own employees and agents. ACM does not tolerate offensive, abusive, bullying, discriminatory or otherwise unlawful behaviour or any form of harassment (“Offending Behaviour”). If a Supplier engages in Offending Behaviour, ACM may suspend or terminate this Milk Supply Agreement.

  • Musculoskeletal Injury Prevention and Control (a) The Hospital in consultation with the Joint Health and Safety Committee (JHSC) shall develop, establish and put into effect, musculoskeletal prevention and control measures, procedures, practices and training for the health and safety of employees.

  • Work Environment It is mutually agreed that the prevention of accidents and injuries to state employees will result in greater efficiency of operations of state government. Toward this end, the Employer shall make every reasonable effort to provide and maintain safe and healthy working conditions and the Union shall fully cooperate by encouraging all employees to perform their assigned tasks in a safe manner.

  • DEVELOPMENT OR ASSISTANCE IN DEVELOPMENT OF SPECIFICATIONS REQUIREMENTS/ STATEMENTS OF WORK Firms and/or individuals that assisted in the development or drafting of the specifications, requirements, statements of work, or solicitation documents contained herein are excluded from competing for this solicitation. This shall not be applicable to firms and/or individuals providing responses to a publicly posted Request for Information (RFI) associated with a solicitation.

  • LIMITATIONS ON REVERSE ENGINEERING, DECOMPILATION AND DISASSEMBLY You may not reverse engineer, decompile, or disassemble the Software, except and only to the extent that such activity is expressly permitted by applicable law notwithstanding this limitation.

  • Management of Special and Technical Environment Each certificated support person demonstrates an acceptable level of performance in managing and organizing the special materials, equipment and environment essential to the specialized programs.

Time is Money Join Law Insider Premium to draft better contracts faster.